miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|292529770|gb|GW746880.1|GW746880 TTTTTTTTTTTTTTTTCTTCAGTTTGGTCGTCTTACCAGATGCTTCATCTTTAACAGCACCACCCAGGACTACAGCAGGT
TCAACCTCATCAAGTACATCAAGGTCCCAAAGCTCAATTTCAGGTTGCATTGTTCCAACAGCAACAAAATTTCCTTTTTC
TCCACCTTTCAAATTACAATCGAGCCAAGCAAGAGAAAGTGGAAAGGCTGGCAAGATGATATCATGATGAACATACATAT
TGGAACCACCCTCTTCAGTTTCTTCTTCATATATCCAGACCTCAAGATGGCTAACATCGTCTTCATTACGAGCTGATAAA
ATAATCAAGTCAAAAGGTTTAATTGTCATGTCTTCGATTTCATCTTCATCATCATCATCTTGTTCTACAAGATAAGGGTC
CATGTCATTGGCTGGGTAGTAACAATTACCAAGAGAACCACTTCCAAAAATGTCAATGCCTTCATCCTCGTCGTCATAAT
GATCCATGTCAAGTTCTTTGAGGCCATTAGCAATATCATCAACCTTGTGCTGCCTTTGAAAATCTGAAGACTGATTCCCA
AGAGCATTTGCTGCTGCTATTGCCTTTGCCACTGCGTCGGTATTTTTATCAGTTTCAGTATCCATATCTTCACTTTCTTC
ATCACTATCTTCATTATCATCACTCTCTGCTACAACGTTACACTTCAATAACTCTTGAATCTCCTCTTGAGTAGGCGGTT
CAGCAGAATCTGGTAGGACCTTTGCAACACCCTTAGGAACCCAACACACTGCTGCAATCATTCTGCACCTTATG




Most similar to sp|Q9P775|YBEG_SCHPO

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q84R49|GUN10_ORYSJ Endoglucanase 10 OS=Oryza sativa subsp.
           japonica GN=GLU2 PE=2 SV=1
          Length = 620

 Score = 79.7 bits (195), Expect(2) = 2e-21
 Identities = 39/58 (67%), Positives = 39/58 (67%)
 Frame = +3

Query: 150 DPWGGPLEIXXXXXXXXXXXXXXXXXXXLMRQLDETQQSWLLAGPGDQAGKKKKKYVD 323
           DPWGGPLEI                   LMRQLDETQQSWLLAGPGDQAGKKKKKYVD
Sbjct: 5   DPWGGPLEISNADSATDDDRSRDLDRGALMRQLDETQQSWLLAGPGDQAGKKKKKYVD 62



 Score = 42.4 bits (98), Expect(2) = 2e-21
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +1

Query: 325 LGCMVLDRKIFMWTVGTI 378
           LGCMVLDRKIFMWTVGTI
Sbjct: 63  LGCMVLDRKIFMWTVGTI 80


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9P775|YBEG_SCHPO Uncharacterized WD repeat_field-containing protein
           C17D11.16 OS=Schizosaccharomyces pombe (strain ATCC
           38366 / 972) GN=SPBC1711.16 PE=1 SV=1
          Length = 516

 Score =  128 bits (321), Expect = 5e-29
 Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 10/250 (4%)
 Frame = -2

Query: 781 MIAAVCWVPKGVAKVLPDS--AEPPTQEEIQELLKCNVVAXXXXXXXXXXXXXXXXXXXD 608
           ++++V +VP+G A   P S   +    E I +L K  +                     +
Sbjct: 3   IVSSVAFVPRGYASEFPKSYDIDEIEYERINQLSKLKLEDARADLQSSMEDSNKANGNGE 62

Query: 607 KNTDXXXXXXXXXXALGNQSSDFQRQHKVDDIANGLKELDMDHYDDEDEGIDIFGSGSL- 431
           + TD                   Q   +VDD    LK  ++D YDD++E  +  G  ++ 
Sbjct: 63  ETTD-------------GAEGVLQTSEEVDD---ELKVYNLDTYDDDEEEAETEGPAAMF 106

Query: 430 ----GNCYYPANDMDPYL-VXXXXXXXXXXXDMTIKPFDLIILSARNEDDVSHLEVWIYE 266
               G  Y+   + DPY+ +           +M I P D ++L+AR ED++SH+EV++YE
Sbjct: 107 SNIRGLAYHENGEKDPYITIDPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYE 166

Query: 265 EETEEGGSNMYVHHDIILPAFPLSLAWLDCNLKGGEK--GNFVAVGTMQPEIELWDLDVL 92
             TEE   N+YVHHD +LP FPL L WLD  +   +   GN+VAVGT  PEIE+WDLD++
Sbjct: 167 P-TEE---NLYVHHDFLLPTFPLCLEWLDYKVGTSDNAPGNYVAVGTFDPEIEIWDLDII 222

Query: 91  DEVEPAVVLG 62
           D V PA VLG
Sbjct: 223 DAVYPAAVLG 232